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available for all major platforms
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Choose from the download links below, and make sure your operating system satisfies the minimum requirements.
For help with installation, see the installation instructions.
Version 1.3.2
First new stable release since 1.3.0. Includes various improvements and bug fixes.A few highlights:
- New color way!
- Image features: sigmas can be specified, 2D/3D filter selection
- Training data no longer required for headless processing
- Carving improvements: block-wise preprocessing, various improvements, fixes
- Window-leveling available in most workflows
- Various improvements and fixes to the object classification workflow
- Two labels always added in Pixel and Object Classification
- Fixed Fiji-MaMuT export plugin
- Will even work on Halloween ;-)
| Windows (64-bit) | version 1.3.2post1 (2019-03-07) | Supported Versions: Windows 7 and later |
|---|---|---|
| Linux (64-bit) | version 1.3.2post1 (2019-03-07) | Supported Versions: glibc 2.5 and up | Mac (64-bit), OSX | version 1.3.2post1 (2019-03-07) | Supported Versions: 10.9 and up |
Latest Beta Version
Version 1.3.3b1
Release Summary:- Support for n5 volumes (https://github.com/saalfeldlab/n5)
- Support for masks in Pixel Classification (an additional dataset can be supplied that disables computation of probabilities wherever it is 0 -> speeds up computation in cases with a lot of background
- Atlas Mask overlays for Object classification (an additional dataset can be supplied. Pixel values of this additional mask are included in result tables but not used in classification.)
- Autocontext now takes arbitrary data types (was previously limitd to uint8), but mind the memory footprint! We still recommend to use uint8.
- Lots of internal fixes and an updated dependency stack
For more details, see the Release Notes. Commercial solver support for cplex version 1290 and gurobi 811 for tracking with learning.
| Windows (64-bit) | version 1.3.3b1 (2019-04-12) | Supported Versions: Windows 7 and later |
|---|---|---|
| Linux (64-bit) | version 1.3.3b1 (2019-04-12) | Supported Versions: Ubuntu 14 and up | Mac (64-bit), OSX | version 1.3.3b1 (2019-04-12) | Supported Versions: 10.9 and up |
Previous stable versions
Version 1.3.0
We have updated all our dependencies, and switched from Python 2 to Python 3.This could mean that projects created with older ilastik versions do not load any more and vice versa. We advise you to make copies of important project files before you try to use them with this new version of ilastik!
For more details, see the Release Notes.
| Windows (64-bit) | version 1.3.0 (2018-01-26) | Supported Versions: Windows 7 and later |
|---|---|---|
| Linux (64-bit) | version 1.3.0 (2018-01-26) | Supported Versions: glibc 2.5 and up | Mac (64-bit), OSX | version 1.3.0 (2018-01-26) | Supported Versions: 10.9 and up |
Version 1.2.2 (based on Python 2)
| Windows (64-bit) | version 1.2.2post2 (2017-11-29) | Supported Versions: Windows 7 and later |
|---|---|---|
| Linux (64-bit) | version 1.2.2post2 (2017-11-29) | Supported Versions: glibc 2.5 and up | Mac (64-bit), OSX | version 1.2.2post2 (2017-11-29) | Supported Versions: Mountain Lion 10.9 and up |
For the difference between the two versions, see Release Notes. For the news of the previous stable version, see previous Release Notes.
Example data and projects
| Dataset | Pixel Classification | Object Classification | Tracking (Automatic and Manual) | Carving | Density Counting | Data Courtesy of | |
|---|---|---|---|---|---|---|---|
| Mitocheck 2D+t (120 MB) | Mitocheck project | ||||||
| Drosophila 3D+t (337 MB) | Hufnagel, EMBL Heidelberg | ||||||
| Counting tutorial (3 MB) | VisRec Project, University of Oxford Lehmussola et al. TMI2007 |
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| FlyEM Project (48 MB) | FlyEM Project, Janelia Research Campus | ||||||
| Helmstaedter (35 MB) | Helmstaedter et al., Max Planck Institute for Medical Research | ||||||
| Small FIB/SEM stack (13.5 MB) | Graham Knott, EPF Lausanne | ||||||
| Fly Bowl Video: Social Flies (130 MB) | Kristin Branson, Janelia Research Campus | ||||||
| Larvae Arena Video (800 MB) | Marta Zlatic, Janelia Research Campus |