Leverage machine learning algorithms to easily segment, classify, track and count your cells or other experimental data. Most operations are interactive, even on large datasets: you just draw the labels and immediately see the result. No machine learning expertise required.


Ready-made packages are available for Linux, Mac, and Windows


ilastik comes with an extensive user manual.


View developer documentation and API docs. Report bugs and request features.


Get in touch with other users at forum.image.sc or contact the friendly ilastik team directly.


ilastik Fiji plugin version 2 released 29 September 2023

We are happy to announce the release of version 2.0 of our Fiji plugin. The plugin allows you to conveniently import and export image in HDF5 format, as well as running trained Pixel Classification, Autocontext, Object Classification, Multicut, and Tracking Workflows from within Fiji.